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GENERAL
TITLE
BOVINE ATP SYNTHASE F1-PERIPHERAL STALK DOMAIN, STATE 1
DATE LAST MODIFIED
30 Sept 2020
RELEASE
9 Sept 2020
OBSOLETE
CLASSIFICATION
HYDROLASE
EXPERIMENT TYPE
ELECTRON MICROSCOPY
SPACE GROUP
P 1
RESOLUTION RANGE HIGH
3.23
RESOLUTION RANGE LOW
3.23
PUBMED ID
DOI
10.1073/PNAS.2013998117
PDBe
--

Chains

Structure ChainTarget ProteinGeneExpression SystemOrganismSynonymsActions
P19483 -- -- CATTLE ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PROTEIN ENCODES GLU. THE ACTUAL RESIDUE IS PYROGLU.HOWEVER PYROGLU AND PYROGLN ARE THE SAME. RESIDUE 481 IN CHAINS A, B,AND C CAN BE GLY OR SER. E.G. IN THIS STRUCTURE SHOULD BE GLY. THEREIS NO DENSITY TO SUPPORT A SER. IT SHOULD BE CONSIDEREDMICROHETEROGENEITY. WE HAVE USED THE FOLLOWING REMARK IN PREVIOUS PDBIDENTIFIED AS A GLY FROM THE PROTEIN REMARK 999 SEQUENCE. IN THE CDNASEQUENCE, THE CODON FOR THIS REMARK 999 RESIDUE WAS AGC SER IN THREECLONES WHILE IN TWO REMARK 999 OTHERS IT WAS GGC GLY. THE DIFFERENCEWAS THOUGHT TO REMARK 999 BE DUE TO A MUTATION OCCURRING DURINGEITHER PROPAGATION REMARK 999 OF THE CLONES IN THE LIBRARY ORSUBCLONING INTO M13 REMARK 999 VECTORS. THE ELECTRON DENSITY SUGGESTSA GLY IN REMARK 999 THIS POSITION. CATTLE
ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PRO ...
Mutations
P19483 -- -- CATTLE ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PROTEIN ENCODES GLU. THE ACTUAL RESIDUE IS PYROGLU.HOWEVER PYROGLU AND PYROGLN ARE THE SAME. RESIDUE 481 IN CHAINS A, B,AND C CAN BE GLY OR SER. E.G. IN THIS STRUCTURE SHOULD BE GLY. THEREIS NO DENSITY TO SUPPORT A SER. IT SHOULD BE CONSIDEREDMICROHETEROGENEITY. WE HAVE USED THE FOLLOWING REMARK IN PREVIOUS PDBIDENTIFIED AS A GLY FROM THE PROTEIN REMARK 999 SEQUENCE. IN THE CDNASEQUENCE, THE CODON FOR THIS REMARK 999 RESIDUE WAS AGC SER IN THREECLONES WHILE IN TWO REMARK 999 OTHERS IT WAS GGC GLY. THE DIFFERENCEWAS THOUGHT TO REMARK 999 BE DUE TO A MUTATION OCCURRING DURINGEITHER PROPAGATION REMARK 999 OF THE CLONES IN THE LIBRARY ORSUBCLONING INTO M13 REMARK 999 VECTORS. THE ELECTRON DENSITY SUGGESTSA GLY IN REMARK 999 THIS POSITION. CATTLE
ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PRO ...
Mutations
P19483 -- -- CATTLE ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PROTEIN ENCODES GLU. THE ACTUAL RESIDUE IS PYROGLU.HOWEVER PYROGLU AND PYROGLN ARE THE SAME. RESIDUE 481 IN CHAINS A, B,AND C CAN BE GLY OR SER. E.G. IN THIS STRUCTURE SHOULD BE GLY. THEREIS NO DENSITY TO SUPPORT A SER. IT SHOULD BE CONSIDEREDMICROHETEROGENEITY. WE HAVE USED THE FOLLOWING REMARK IN PREVIOUS PDBIDENTIFIED AS A GLY FROM THE PROTEIN REMARK 999 SEQUENCE. IN THE CDNASEQUENCE, THE CODON FOR THIS REMARK 999 RESIDUE WAS AGC SER IN THREECLONES WHILE IN TWO REMARK 999 OTHERS IT WAS GGC GLY. THE DIFFERENCEWAS THOUGHT TO REMARK 999 BE DUE TO A MUTATION OCCURRING DURINGEITHER PROPAGATION REMARK 999 OF THE CLONES IN THE LIBRARY ORSUBCLONING INTO M13 REMARK 999 VECTORS. THE ELECTRON DENSITY SUGGESTSA GLY IN REMARK 999 THIS POSITION. CATTLE
ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PRO ...
Mutations
P00829 -- -- CATTLE -- CATTLE -- Mutations
P00829 -- -- CATTLE -- CATTLE -- Mutations
P00829 -- -- CATTLE -- CATTLE -- Mutations
P05631 -- -- CATTLE F-ATPASE GAMMA SUBUNIT CATTLE
F-ATPASE GAMMA SUBUNIT
Mutations
P05630 -- -- CATTLE F-ATPASE DELTA SUBUNIT CATTLE
F-ATPASE DELTA SUBUNIT
Mutations
P05632 -- -- CATTLE ATPASE SUBUNIT EPSILON CATTLE
ATPASE SUBUNIT EPSILON
Mutations
P01096 ATPIF1, ATPI ESCHERICHIA COLI CATTLE INHIBITOR OF F(1)F(O)-ATPASE,IF160 PLUS 6 HISTIDINES CATTLE
INHIBITOR OF F(1)F(O)-ATPASE,IF160 PLUS 6 HISTIDIN ...
Mutations
NGL Viewer is used for the molecular visualization.
  • AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose. NGL viewer: web-based molecular graphics for large complexes. Bioinformatics: bty419, 2018. doi:10.1093/bioinformatics/bty419
  • AS Rose and PW Hildebrand. NGL Viewer: a web application for molecular visualization. Nucl Acids Res (1 July 2015) 43 (W1): W576-W579 first published online April 29, 2015. doi:10.1093/nar/gkv402