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GENERAL
TITLE
BOVINE ATP SYNTHASE F1-PERIPHERAL STALK DOMAIN, STATE 1
DATE LAST MODIFIED
30 Sept 2020
RELEASE
9 Sept 2020
OBSOLETE
CLASSIFICATION
HYDROLASE
EXPERIMENT TYPE
ELECTRON MICROSCOPY
SPACE GROUP
P 1
RESOLUTION RANGE HIGH
3.23
RESOLUTION RANGE LOW
3.23
PUBMED ID
DOI
10.1073/PNAS.2013998117
PDBe
--
Chains
| Structure Chain | Target Protein | Gene | Expression System | Organism | Synonyms | Actions | ||
|---|---|---|---|---|---|---|---|---|
| P19483 | -- | -- | CATTLE | ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PROTEIN ENCODES GLU. THE ACTUAL RESIDUE IS PYROGLU.HOWEVER PYROGLU AND PYROGLN ARE THE SAME. RESIDUE 481 IN CHAINS A, B,AND C CAN BE GLY OR SER. E.G. IN THIS STRUCTURE SHOULD BE GLY. THEREIS NO DENSITY TO SUPPORT A SER. IT SHOULD BE CONSIDEREDMICROHETEROGENEITY. WE HAVE USED THE FOLLOWING REMARK IN PREVIOUS PDBIDENTIFIED AS A GLY FROM THE PROTEIN REMARK 999 SEQUENCE. IN THE CDNASEQUENCE, THE CODON FOR THIS REMARK 999 RESIDUE WAS AGC SER IN THREECLONES WHILE IN TWO REMARK 999 OTHERS IT WAS GGC GLY. THE DIFFERENCEWAS THOUGHT TO REMARK 999 BE DUE TO A MUTATION OCCURRING DURINGEITHER PROPAGATION REMARK 999 OF THE CLONES IN THE LIBRARY ORSUBCLONING INTO M13 REMARK 999 VECTORS. THE ELECTRON DENSITY SUGGESTSA GLY IN REMARK 999 THIS POSITION. | CATTLE | ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PRO ... | Mutations | |
| P19483 | -- | -- | CATTLE | ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PROTEIN ENCODES GLU. THE ACTUAL RESIDUE IS PYROGLU.HOWEVER PYROGLU AND PYROGLN ARE THE SAME. RESIDUE 481 IN CHAINS A, B,AND C CAN BE GLY OR SER. E.G. IN THIS STRUCTURE SHOULD BE GLY. THEREIS NO DENSITY TO SUPPORT A SER. IT SHOULD BE CONSIDEREDMICROHETEROGENEITY. WE HAVE USED THE FOLLOWING REMARK IN PREVIOUS PDBIDENTIFIED AS A GLY FROM THE PROTEIN REMARK 999 SEQUENCE. IN THE CDNASEQUENCE, THE CODON FOR THIS REMARK 999 RESIDUE WAS AGC SER IN THREECLONES WHILE IN TWO REMARK 999 OTHERS IT WAS GGC GLY. THE DIFFERENCEWAS THOUGHT TO REMARK 999 BE DUE TO A MUTATION OCCURRING DURINGEITHER PROPAGATION REMARK 999 OF THE CLONES IN THE LIBRARY ORSUBCLONING INTO M13 REMARK 999 VECTORS. THE ELECTRON DENSITY SUGGESTSA GLY IN REMARK 999 THIS POSITION. | CATTLE | ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PRO ... | Mutations | |
| P19483 | -- | -- | CATTLE | ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PROTEIN ENCODES GLU. THE ACTUAL RESIDUE IS PYROGLU.HOWEVER PYROGLU AND PYROGLN ARE THE SAME. RESIDUE 481 IN CHAINS A, B,AND C CAN BE GLY OR SER. E.G. IN THIS STRUCTURE SHOULD BE GLY. THEREIS NO DENSITY TO SUPPORT A SER. IT SHOULD BE CONSIDEREDMICROHETEROGENEITY. WE HAVE USED THE FOLLOWING REMARK IN PREVIOUS PDBIDENTIFIED AS A GLY FROM THE PROTEIN REMARK 999 SEQUENCE. IN THE CDNASEQUENCE, THE CODON FOR THIS REMARK 999 RESIDUE WAS AGC SER IN THREECLONES WHILE IN TWO REMARK 999 OTHERS IT WAS GGC GLY. THE DIFFERENCEWAS THOUGHT TO REMARK 999 BE DUE TO A MUTATION OCCURRING DURINGEITHER PROPAGATION REMARK 999 OF THE CLONES IN THE LIBRARY ORSUBCLONING INTO M13 REMARK 999 VECTORS. THE ELECTRON DENSITY SUGGESTSA GLY IN REMARK 999 THIS POSITION. | CATTLE | ATP SYNTHASE F1 SUBUNIT ALPHASEQUENCE FOR THIS PRO ... | Mutations | |
| P00829 | -- | -- | CATTLE | -- | CATTLE | -- | Mutations | |
| P00829 | -- | -- | CATTLE | -- | CATTLE | -- | Mutations | |
| P00829 | -- | -- | CATTLE | -- | CATTLE | -- | Mutations | |
| P05631 | -- | -- | CATTLE | F-ATPASE GAMMA SUBUNIT | CATTLE | F-ATPASE GAMMA SUBUNIT | Mutations | |
| P05630 | -- | -- | CATTLE | F-ATPASE DELTA SUBUNIT | CATTLE | F-ATPASE DELTA SUBUNIT | Mutations | |
| P05632 | -- | -- | CATTLE | ATPASE SUBUNIT EPSILON | CATTLE | ATPASE SUBUNIT EPSILON | Mutations | |
| P01096 | ATPIF1, ATPI | ESCHERICHIA COLI | CATTLE | INHIBITOR OF F(1)F(O)-ATPASE,IF160 PLUS 6 HISTIDINES | CATTLE | INHIBITOR OF F(1)F(O)-ATPASE,IF160 PLUS 6 HISTIDIN ... | Mutations |
NGL Viewer is used for the molecular visualization.
- AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose. NGL viewer: web-based molecular graphics for large complexes. Bioinformatics: bty419, 2018. doi:10.1093/bioinformatics/bty419
- AS Rose and PW Hildebrand. NGL Viewer: a web application for molecular visualization. Nucl Acids Res (1 July 2015) 43 (W1): W576-W579 first published online April 29, 2015. doi:10.1093/nar/gkv402