3D Structure View
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GENERAL
TITLE
3D MODEL OF THE 3-RBD UP SINGLE TRIMERIC SPIKE PROTEIN OF SARS-COV2 IN THE PRESENCE OF SYNTHETIC PEPTIDE SIH-5.
DATE LAST MODIFIED
-
RELEASE
27 Apr 2022
OBSOLETE
CLASSIFICATION
VIRAL PROTEIN
EXPERIMENT TYPE
ELECTRON MICROSCOPY
SPACE GROUP
P 1
RESOLUTION RANGE HIGH
4.47
RESOLUTION RANGE LOW
4.47
PUBMED ID
-
DOI
--
PDBe
--
LIGANDS
--
Chains
| Structure Chain | Target Protein | Gene | Expression System | Organism | Synonyms | Actions | ||
|---|---|---|---|---|---|---|---|---|
| P0DTC2 | S, 2 | HOMO SAPIENS | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS | S GLYCOPROTEIN,E2,PEPLOMER PROTEINDEPOSITED CONSTRUCT, SPIKE PROTEIN IS COMPOSED OF 1-1208 AMINO ACIDRESIDUES, WHICH HAVE THE FOLLOWING MUTATIONS R682G, R683S, R685S,K986P, V987P. AT THE C TERMINUS, THERE IS FOLDON OLIGOMERIZATIONDOMAIN, HRV3C PROTEASE SITE, 6 HIS, STREP-TAG II, LINKER, STREP-TAGII, STOP CODON. | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS | S GLYCOPROTEIN,E2,PEPLOMER PROTEINDEPOSITED CONSTR ... | Mutations | |
| P0DTC2 | S, 2 | HOMO SAPIENS | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS | S GLYCOPROTEIN,E2,PEPLOMER PROTEINDEPOSITED CONSTRUCT, SPIKE PROTEIN IS COMPOSED OF 1-1208 AMINO ACIDRESIDUES, WHICH HAVE THE FOLLOWING MUTATIONS R682G, R683S, R685S,K986P, V987P. AT THE C TERMINUS, THERE IS FOLDON OLIGOMERIZATIONDOMAIN, HRV3C PROTEASE SITE, 6 HIS, STREP-TAG II, LINKER, STREP-TAGII, STOP CODON. | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS | S GLYCOPROTEIN,E2,PEPLOMER PROTEINDEPOSITED CONSTR ... | Mutations | |
| P0DTC2 | S, 2 | HOMO SAPIENS | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS | S GLYCOPROTEIN,E2,PEPLOMER PROTEINDEPOSITED CONSTRUCT, SPIKE PROTEIN IS COMPOSED OF 1-1208 AMINO ACIDRESIDUES, WHICH HAVE THE FOLLOWING MUTATIONS R682G, R683S, R685S,K986P, V987P. AT THE C TERMINUS, THERE IS FOLDON OLIGOMERIZATIONDOMAIN, HRV3C PROTEASE SITE, 6 HIS, STREP-TAG II, LINKER, STREP-TAGII, STOP CODON. | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS | S GLYCOPROTEIN,E2,PEPLOMER PROTEINDEPOSITED CONSTR ... | Mutations | |
| -- | -- | SYNTHETIC CONSTRUCT | -- | SYNTHETIC CONSTRUCT | -- | |||
| -- | -- | SYNTHETIC CONSTRUCT | -- | SYNTHETIC CONSTRUCT | -- | |||
| -- | -- | SYNTHETIC CONSTRUCT | -- | SYNTHETIC CONSTRUCT | -- | |||
| -- | -- | SYNTHETIC CONSTRUCT | -- | SYNTHETIC CONSTRUCT | -- | |||
| -- | -- | SYNTHETIC CONSTRUCT | -- | SYNTHETIC CONSTRUCT | -- | |||
| -- | -- | SYNTHETIC CONSTRUCT | -- | SYNTHETIC CONSTRUCT | -- |
NGL Viewer is used for the molecular visualization.
- AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose. NGL viewer: web-based molecular graphics for large complexes. Bioinformatics: bty419, 2018. doi:10.1093/bioinformatics/bty419
- AS Rose and PW Hildebrand. NGL Viewer: a web application for molecular visualization. Nucl Acids Res (1 July 2015) 43 (W1): W576-W579 first published online April 29, 2015. doi:10.1093/nar/gkv402